A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2025-01-21, 17:49 +0330 based on data in:
/home/tahmineh/RNASeq_PROJECT/pmapping/SRR30861166_summary.txt/home/tahmineh/RNASeq_PROJECT/pmapping/SRR30861167_summary.txt/home/tahmineh/RNASeq_PROJECT/pmapping/SRR30861168_summary.txt/home/tahmineh/RNASeq_PROJECT/pmapping/SRR30861169_summary.txt/home/tahmineh/RNASeq_PROJECT/pmapping/SRR30861170_summary.txt/home/tahmineh/RNASeq_PROJECT/pmapping/SRR30861171_summary.txt
General Statistics
| Sample Name | % Aligned |
|---|---|
| SRR30861166 | 87.3% |
| SRR30861167 | 97.4% |
| SRR30861168 | 97.1% |
| SRR30861169 | 96.6% |
| SRR30861170 | 93.6% |
| SRR30861171 | 97.7% |
Bowtie 2 / HiSAT2
Results from both Bowtie 2 and HISAT2, tools for aligning reads against a reference genome.URL: http://bowtie-bio.sourceforge.net/bowtie2; https://ccb.jhu.edu/software/hisat2DOI: 10.1038/nmeth.1923; 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4
Paired-end alignments
This plot shows the number of reads aligning to the reference in different ways.
There are 6 possible types of alignment:
- PE mapped uniquely: Pair has only one occurence in the reference genome.
- PE mapped discordantly uniquely: Pair has only one occurence but not in proper pair.
- PE one mate mapped uniquely: One read of a pair has one occurence.
- PE multimapped: Pair has multiple occurence.
- PE one mate multimapped: One read of a pair has multiple occurence.
- PE neither mate aligned: Pair has no occurence.